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Silicon in PDB, part 1 (files: 1-40), PDB 1fuq-7zpw

Experimental structures of coordination spheres of Silicon (Si) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Silicon atoms. PDB files: 1-40 (PDB 1fuq-7zpw).
  1. 1fuq (Si: 2) - Fumarase with Bound Pyromellitic Acid
  2. 1fv2 (Si: 2) - The Hc Fragment of Tetanus Toxin Complexed with An Analogue of Its Ganglioside Receptor GT1B
  3. 1fv3 (Si: 4) - The Hc Fragment of Tetanus Toxin Complexed with An Analogue of Its Ganglioside Receptor GT1B
  4. 1nd0 (Si: 4) - Cationic Cyclization Antibody 4C6 Complex with Transition State Analog
  5. 1tuj (Si: 17) - Solution Structure of the Honey Bee General Odorant Binding Protein ASP2 in Complex with Trimethylsilyl-D4 Propionate
  6. 1xz0 (Si: 1) - Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide
  7. 1y3g (Si: 1) - Crystal Structure of A Silanediol Protease Inhibitor Bound to Thermolysin
    Other atoms: Ca (4); Zn (1);
  8. 2fud (Si: 2) - Human Cathepsin S with Inhibitor Cra-27566
  9. 2hrl (Si: 1) - Siglec-7 in Complex with GT1B
  10. 2zy0 (Si: 4) - Crystal Structure of the Human Rxr Alpha Ligand Binding Domain Bound to A Synthetic Agonist Compound and A Coactivator Peptide
  11. 3qo9 (Si: 2) - Crystal Structure of Hiv-1 Reverse Transcriptase (Rt) in Complex with Tsao-T, A Non-Nucleoside Rt Inhibitor (Nnrti)
  12. 3wlu (Si: 4) - Crystal Structure of Human Galectin-9 Ncrd with Selenolactose
  13. 4ehr (Si: 1) - Crystal Structure of Bcl-Xl Complex with 4-(5-Butyl-3-(Hydroxymethyl)- 1-Phenyl-1H-Pyrazol-4-Yl)-3-(3,4-Dihydro-2(1H)- Isoquinolinylcarbonyl)-N-((2-(Trimethylsilyl)Ethyl)Sulfonyl)Benzamide
  14. 4mpw (Si: 2) - Human Beta-Tryptase Co-Crystal Structure with [(1,1,3,3- Tetramethyldisiloxane-1,3-Diyl)Di-1-Benzofuran-3,5-Diyl]Bis({4-[3- (Aminomethyl)Phenyl]Piperidin-1-Yl}Methanone)
    Other atoms: Cl (2);
  15. 4mpx (Si: 2) - Human Beta-Tryptase Co-Crystal Structure with [(1,1,3,3- Tetramethyldisiloxane-1,3-Diyl)Di-1-Benzothiene-4,2-Diyl]Bis({4-[3- (Aminomethyl)Phenyl]Piperidin-1-Yl}Methanone)
    Other atoms: Cl (2);
  16. 4mqa (Si: 2) - Human Beta-Tryptase Co-Crystal Structure with {(1,1,3,3- Tetramethyldisiloxane-1,3-Diyl)Bis[5-(Methylsulfanyl)Benzene-3,1- Diyl]}Bis({4-[3-(Aminomethyl)Phenyl]Piperidin-1-Yl}Methanone)
  17. 6abk (Si: 3) - Crystal Structure of Methanosarcina Mazei Pylrs(Y306A/Y384F) Complexed with Teoclys
    Other atoms: Mg (3);
  18. 6b30 (Si: 2) - Structure of Rorgt in Complex with A Novel Inverse Agonist 1
  19. 6c6n (Si: 2) - Human Squalene Epoxidase (Sqle, Squalene Monooxygenase) Structure with Fad and Cmpd-4"
  20. 6i4v (Si: 1) - Alpha-1-Antitrypsin Queen'S (K154N) Variant
  21. 6krg (Si: 1) - Crystal Structure of Sfgfp Y182TMSIPHE
    Other atoms: Cl (3); Na (1);
  22. 6m6d (Si: 1) - Structure of Hppd Complexed with A Synthesized Inhibitor
    Other atoms: Co (1);
  23. 6qsf (Si: 3) - Crystal Structure of PIZZA6S in the Presence of Keggin (Sta)
    Other atoms: W (36);
  24. 6qsg (Si: 6) - Crystal Structure of the Hybrid Bioinorganic Complex of PIZZA6S and Keggin (Sta)
    Other atoms: W (72);
  25. 6rve (Si: 3) - Co-Substituted Beta-Keggin Bound to Proteinase K Solved By Mr
    Other atoms: W (33); Co (3);
  26. 6rvg (Si: 4) - Co-Substituted Beta-Keggin Bound to Proteinase K Solved By Mr
    Other atoms: W (44); Co (4);
  27. 6u2m (Si: 2) - Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635
    Other atoms: F (4); Ca (8); Cl (2);
  28. 6y7o (Si: 20) - The Complex Between the Eight-Bladed Symmetrical Designer Protein TAKO8 and the Silicotungstic Acid Keggin (Sta)
    Other atoms: W (240);
  29. 7a9f (Si: 2) - Co-Substituted Keggin Silicotungstate with Covalent Bond to Proteinase K
    Other atoms: W (22); Co (2);
  30. 7a9k (Si: 2) - Co-Substituted Keggin Silicotungstate with Covalent Bond to Proteinase K
    Other atoms: Co (2); W (22);
  31. 7a9m (Si: 2) - Ni-Substituted Keggin Silicotungstate with Covalent Bond to Proteinase K
    Other atoms: W (22); Ni (2);
  32. 7ax0 (Si: 1) - Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A
    Other atoms: W (12);
  33. 7ax2 (Si: 2) - Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B
    Other atoms: Na (1); W (23);
  34. 7ckg (Si: 1) - Crystal Structure of Tmsiphers Complexed with Tmsiphe
  35. 7zba (Si: 2) - Halotag with Me-Traq-G Ligand
    Other atoms: Cl (2);
  36. 7zbb (Si: 2) - Halotag with Traq-G-Ctrl Ligand
    Other atoms: Cl (2);
  37. 7zbd (Si: 2) - Halotag with Traq-G Ligand
    Other atoms: Cl (2);
  38. 7zcj (Si: 2) - Crystal Structure of PIZZA6-Tnh-Tsh with Silicotungstic Acid (Sta) Polyoxometalate
    Other atoms: W (24);
  39. 7zph (Si: 4) - Crystal Structure of PIZZA6-Tnk-Rsh with Silicotungstic Acid (Sta) Polyoxometalate
    Other atoms: W (48);
  40. 7zpw (Si: 4) - Crystal Structure of PIZZA6-Tsk-Tsh with Silicotungstic Acid (Sta) Polyoxometalate
    Other atoms: W (48);
Page generated: Thu Dec 28 12:00:21 2023

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