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Silicon in PDB 1xz0: Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide

Protein crystallography data

The structure of Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide, PDB code: 1xz0 was solved by D.M.Zajonc, M.D.Crispin, T.A.Bowden, D.C.Young, T.Y.Cheng, J.Hu, C.E.Costello, M.J.Miller, D.B.Moody, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.63 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.961, 43.235, 209.944, 90.00, 91.04, 90.00
R / Rfree (%) 21.7 / 27.7

Silicon Binding Sites:

The binding sites of Silicon atom in the Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide (pdb code 1xz0). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total only one binding site of Silicon was determined in the Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide, PDB code: 1xz0:

Silicon binding site 1 out of 1 in 1xz0

Go back to Silicon Binding Sites List in 1xz0
Silicon binding site 1 out of 1 in the Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of CD1A in Complex with A Synthetic Mycobactin Lipopeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si601

b:99.9
occ:1.00
SI70 A:JH0601 0.0 99.9 1.0
ON2 A:JH0601 1.8 97.8 1.0
N3 A:JH0601 2.7 97.1 1.0
C31 A:JH0601 3.2 97.2 1.0
C32 A:JH0601 3.7 96.5 1.0
C36 A:JH0601 3.8 95.2 1.0
C33 A:JH0601 3.9 95.8 1.0
O5 A:JH0601 4.1 95.3 1.0
CE2 A:TYR84 4.5 51.7 1.0
C42 A:JH0601 4.5 0.6 1.0
C43 A:JH0601 4.7 0.4 1.0
OH A:TYR84 4.7 51.4 1.0
C34 A:JH0601 4.9 95.3 1.0
C35 A:JH0601 4.9 94.0 1.0
CZ A:TYR84 5.0 51.6 1.0

Reference:

D.M.Zajonc, M.D.Crispin, T.A.Bowden, D.C.Young, T.Y.Cheng, J.Hu, C.E.Costello, P.M.Rudd, R.A.Dwek, M.J.Miller, M.B.Brenner, D.B.Moody, I.A.Wilson. Molecular Mechanism of Lipopeptide Presentation By CD1A. Immunity V. 22 209 2005.
ISSN: ISSN 1074-7613
PubMed: 15723809
DOI: 10.1016/J.IMMUNI.2004.12.009
Page generated: Wed Dec 16 02:09:28 2020

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