Chemical elements
  Silicon
    Isotopes
    Energy
    Physical Properties
    Chemical Properties
    PDB 1fuq-4ehr
      1fuq
      1fv2
      1fv3
      1nd0
      1tuj
      1xz0
      1y3g
      2fud
      2hrl
      2zy0
      4ehr

Silicon in the structure of Crystal Structure of CD1A in Complex With A Synthetic Mycobactin Lipopeptide (pdb 1xz0)






The binding sites of Silicon atom in the structure of Crystal Structure of CD1A in Complex With A Synthetic Mycobactin Lipopeptide (pdb code 1xz0). This binding sites where shown with 5.0 Angstroms radius around Silicon atom.
The 1xz0 structure was solved by D.M.ZAJONC, M.D.CRISPIN, T.A.BOWDEN, D.C.YOUNG, T.Y.CHENG, J.HU, C.E.COSTELLO, M.J.MILLER, D.B.MOODY, I.A.WILSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)38.6-2.8
Space groupP1211
a (A)55.961
b (A)43.235
c (A)209.944
alpha (°)90.00
beta (°)91.04
gamma (°)90.00
Rfactor (%)21.7
Rfree (%)27.7


Silicon Binding Sites:

Silicon binding site 1 out of 1 in 1xz0


Silicon binding site 1 out of 1 in 1xz0
Click to enlarge
stereopicture of Silicon binding site 1 out of 1 in 1xz0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Silicon in the PDB 1xz0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silicon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr84, A: Jh0601,

conact list:


AtomAtomDistance (A)
SiCE2 A:Tyr844.50
SiCZ A:Tyr844.99
SiOH A:Tyr844.69
SiO5 A:Jh06014.14
SiN3 A:Jh06012.74
SiC36 A:Jh06013.77
SiC31 A:Jh06013.23
SiC35 A:Jh06014.95
SiON2 A:Jh06011.79
SiC32 A:Jh06013.72
SiC42 A:Jh06014.51
SiSI70 A:Jh06010.00
SiC43 A:Jh06014.66
SiC34 A:Jh06014.87
SiC33 A:Jh06013.86

interactive model:




© Copyright 2008-2012 by atomistry.com