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Silicon in PDB 7ax0: Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A

Protein crystallography data

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A, PDB code: 7ax0 was solved by B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.17 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.27, 88.27, 194.987, 90, 90, 120
R / Rfree (%) 20.8 / 24

Other elements in 7ax0:

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A also contains other interesting chemical elements:

Tungsten (W) 12 atoms

Silicon Binding Sites:

The binding sites of Silicon atom in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A (pdb code 7ax0). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total only one binding site of Silicon was determined in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A, PDB code: 7ax0:

Silicon binding site 1 out of 1 in 7ax0

Go back to Silicon Binding Sites List in 7ax0
Silicon binding site 1 out of 1 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta Form A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si401

b:59.4
occ:0.14
SI1 A:SIW401 0.0 59.4 0.1
O19E A:SIW401 1.5 59.4 0.1
O4 A:SIW401 1.5 59.4 0.1
O22 A:SIW401 1.7 59.4 0.1
O21 A:SIW401 1.7 59.4 0.1
W2E A:SIW401 3.3 59.4 0.1
O16E A:SIW401 3.3 59.4 0.1
W7 A:SIW401 3.4 59.4 0.1
O7E A:SIW401 3.4 59.4 0.1
W4E A:SIW401 3.5 59.4 0.1
W5 A:SIW401 3.5 59.4 0.1
O18E A:SIW401 3.5 59.4 0.1
W2 A:SIW401 3.5 59.4 0.1
W3 A:SIW401 3.5 59.4 0.1
W4 A:SIW401 3.5 59.4 0.1
W1 A:SIW401 3.6 59.4 0.1
W1E A:SIW401 3.6 59.4 0.1
W6 A:SIW401 3.6 59.4 0.1
O18 A:SIW401 3.6 59.4 0.1
O8 A:SIW401 3.6 59.4 0.1
W3E A:SIW401 3.6 59.4 0.1
O16 A:SIW401 3.6 59.4 0.1
O9 A:SIW401 3.6 59.4 0.1
W5E A:SIW401 3.6 59.4 0.1
O9E A:SIW401 3.6 59.4 0.1
O20E A:SIW401 3.7 59.4 0.1
O23 A:SIW401 3.7 59.4 0.1
O2 A:SIW401 3.7 59.4 0.1
O17E A:SIW401 3.7 59.4 0.1
O17 A:SIW401 3.7 59.4 0.1
O20 A:SIW401 3.7 59.4 0.1
O1 A:SIW401 3.7 59.4 0.1
O8E A:SIW401 3.7 59.4 0.1
O3E A:SIW401 3.8 59.4 0.1
O1E A:SIW401 3.8 59.4 0.1
O2E A:SIW401 3.8 59.4 0.1
O23E A:SIW401 3.8 59.4 0.1
O7 A:SIW401 3.9 59.4 0.1
O15 A:SIW401 3.9 59.4 0.1
O15E A:SIW401 4.0 59.4 0.1
O3 A:SIW401 4.0 59.4 0.1

Reference:

B.Mylemans, T.Killian, L.Vandebroek, J.R.H.Tame, T.N.Parac-Vogt, A.R.D.Voet. Crystal Structures of Scone: Pseudosymmetric Folding of A Symmetric Designer Protein Acta Cryst. D V. 77 2021.
ISSN: ISSN 2059-7983
Page generated: Mon Jul 12 16:12:17 2021

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