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Silicon in PDB 2fud: Human Cathepsin S with Inhibitor Cra-27566

Enzymatic activity of Human Cathepsin S with Inhibitor Cra-27566

All present enzymatic activity of Human Cathepsin S with Inhibitor Cra-27566:
3.4.22.27;

Protein crystallography data

The structure of Human Cathepsin S with Inhibitor Cra-27566, PDB code: 2fud was solved by J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.82 / 1.95
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.420, 85.420, 151.990, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.7

Silicon Binding Sites:

The binding sites of Silicon atom in the Human Cathepsin S with Inhibitor Cra-27566 (pdb code 2fud). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Human Cathepsin S with Inhibitor Cra-27566, PDB code: 2fud:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in 2fud

Go back to Silicon Binding Sites List in 2fud
Silicon binding site 1 out of 2 in the Human Cathepsin S with Inhibitor Cra-27566


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Human Cathepsin S with Inhibitor Cra-27566 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si999

b:26.9
occ:1.00
SI1 A:CRL999 0.0 26.9 1.0
C16 A:CRL999 1.8 26.6 1.0
C15 A:CRL999 1.8 23.0 1.0
C17 A:CRL999 1.8 25.1 1.0
C14 A:CRL999 1.8 22.9 1.0
C6 A:CRL999 2.9 21.2 1.0
N1 A:CRL999 3.4 21.2 1.0
O A:GLY66 4.2 14.9 1.0
C7 A:CRL999 4.2 19.5 1.0
C1 A:CRL999 4.6 22.2 1.0
C A:ASN158 4.6 15.0 1.0
N A:GLY160 4.7 12.8 1.0
O A:ASN158 4.8 15.2 1.0
SD A:MET68 4.8 14.3 1.0
N A:HIS159 4.8 13.7 1.0
O3 A:CRL999 4.8 21.1 1.0
C A:HIS159 4.9 15.7 1.0
CA A:ASN158 4.9 14.5 1.0
CA A:GLY160 5.0 12.7 1.0

Silicon binding site 2 out of 2 in 2fud

Go back to Silicon Binding Sites List in 2fud
Silicon binding site 2 out of 2 in the Human Cathepsin S with Inhibitor Cra-27566


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Human Cathepsin S with Inhibitor Cra-27566 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si998

b:17.6
occ:1.00
SI1 B:CRL998 0.0 17.6 1.0
C17 B:CRL998 1.8 18.4 1.0
C16 B:CRL998 1.8 19.5 1.0
C15 B:CRL998 1.8 14.8 1.0
C14 B:CRL998 1.8 16.2 1.0
C6 B:CRL998 2.9 12.8 1.0
N1 B:CRL998 3.4 15.0 1.0
O B:GLY66 4.2 13.6 1.0
C7 B:CRL998 4.2 16.1 1.0
C1 B:CRL998 4.5 14.4 1.0
O B:ASN158 4.7 14.0 1.0
C B:ASN158 4.8 13.8 1.0
SD B:MET68 4.8 14.8 1.0
O3 B:CRL998 4.9 10.6 1.0
N B:GLY160 4.9 14.1 1.0
N3 B:CRL998 5.0 13.7 1.0
CG2 B:VAL157 5.0 11.5 1.0

Reference:

J.R.Somoza, J.R.Somoza. N/A N/A.
Page generated: Wed Dec 16 02:09:29 2020

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