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    PDB 1fuq-4ehr
      1fuq
      1fv2
      1fv3
      1nd0
      1tuj
      1xz0
      1y3g
      2fud
      2hrl
      2zy0
      4ehr

Silicon in the structure of Human Cathepsin S With Inhibitor Cra-27566 (pdb 2fud)






The binding sites of Silicon atom in the structure of Human Cathepsin S With Inhibitor Cra-27566 (pdb code 2fud). This binding sites where shown with 5.0 Angstroms radius around Silicon atom.
The 2fud structure was solved by J.R.SOMOZA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)38.8-1.9
Space groupP4122
a (A)85.420
b (A)85.420
c (A)151.990
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19
Rfree (%)21.7


Silicon Binding Sites:

Silicon binding site 1 out of 2 in 2fud


Silicon binding site 1 out of 2 in 2fud
Click to enlarge
stereopicture of Silicon binding site 1 out of 2 in 2fud
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Silicon in the PDB 2fud. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silicon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly66, A: Met68, A: Asn158, A: His159, A: Gly160, A: Crl999,

conact list:


AtomAtomDistance (A)
SiO A:Gly664.15
SiSD A:Met684.80
SiO A:Asn1584.76
SiC A:Asn1584.64
SiCA A:Asn1584.94
SiN A:His1594.82
SiC A:His1594.94
SiN A:Gly1604.69
SiCA A:Gly1604.98
SiSI1 A:Crl9990.00
SiC1 A:Crl9994.56
SiC14 A:Crl9991.81
SiO3 A:Crl9994.83
SiN1 A:Crl9993.39
SiC16 A:Crl9991.80
SiC6 A:Crl9992.90
SiC7 A:Crl9994.20
SiC17 A:Crl9991.81
SiC15 A:Crl9991.80

interactive model:


Silicon binding site 2 out of 2 in 2fud


Silicon binding site 2 out of 2 in 2fud
Click to enlarge
stereopicture of Silicon binding site 2 out of 2 in 2fud
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Silicon in the PDB 2fud. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silicon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gly66, B: Met68, B: Val157, B: Asn158, B: Gly160, B: Crl998,

conact list:


AtomAtomDistance (A)
SiO B:Gly664.17
SiSD B:Met684.84
SiCG2 B:Val1574.99
SiO B:Asn1584.69
SiC B:Asn1584.76
SiN B:Gly1604.87
SiSI1 B:Crl9980.00
SiN3 B:Crl9984.97
SiC1 B:Crl9984.53
SiC14 B:Crl9981.80
SiO3 B:Crl9984.87
SiN1 B:Crl9983.37
SiC16 B:Crl9981.80
SiC6 B:Crl9982.88
SiC7 B:Crl9984.20
SiC17 B:Crl9981.80
SiC15 B:Crl9981.80

interactive model:




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