Atomistry » Silicon » PDB 1fuq-7ckg » 2fud
Atomistry »
  Silicon »
    PDB 1fuq-7ckg »
      2fud »

Silicon in PDB 2fud: Human Cathepsin S with Inhibitor Cra-27566

Enzymatic activity of Human Cathepsin S with Inhibitor Cra-27566

All present enzymatic activity of Human Cathepsin S with Inhibitor Cra-27566:
3.4.22.27;

Protein crystallography data

The structure of Human Cathepsin S with Inhibitor Cra-27566, PDB code: 2fud was solved by J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.82 / 1.95
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.420, 85.420, 151.990, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.7

Silicon Binding Sites:

The binding sites of Silicon atom in the Human Cathepsin S with Inhibitor Cra-27566 (pdb code 2fud). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Human Cathepsin S with Inhibitor Cra-27566, PDB code: 2fud:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in 2fud

Go back to Silicon Binding Sites List in 2fud
Silicon binding site 1 out of 2 in the Human Cathepsin S with Inhibitor Cra-27566


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Human Cathepsin S with Inhibitor Cra-27566 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si999

b:26.9
occ:1.00
SI1 A:CRL999 0.0 26.9 1.0
C16 A:CRL999 1.8 26.6 1.0
C15 A:CRL999 1.8 23.0 1.0
C17 A:CRL999 1.8 25.1 1.0
C14 A:CRL999 1.8 22.9 1.0
C6 A:CRL999 2.9 21.2 1.0
N1 A:CRL999 3.4 21.2 1.0
O A:GLY66 4.2 14.9 1.0
C7 A:CRL999 4.2 19.5 1.0
C1 A:CRL999 4.6 22.2 1.0
C A:ASN158 4.6 15.0 1.0
N A:GLY160 4.7 12.8 1.0
O A:ASN158 4.8 15.2 1.0
SD A:MET68 4.8 14.3 1.0
N A:HIS159 4.8 13.7 1.0
O3 A:CRL999 4.8 21.1 1.0
C A:HIS159 4.9 15.7 1.0
CA A:ASN158 4.9 14.5 1.0
CA A:GLY160 5.0 12.7 1.0

Silicon binding site 2 out of 2 in 2fud

Go back to Silicon Binding Sites List in 2fud
Silicon binding site 2 out of 2 in the Human Cathepsin S with Inhibitor Cra-27566


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Human Cathepsin S with Inhibitor Cra-27566 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si998

b:17.6
occ:1.00
SI1 B:CRL998 0.0 17.6 1.0
C17 B:CRL998 1.8 18.4 1.0
C16 B:CRL998 1.8 19.5 1.0
C15 B:CRL998 1.8 14.8 1.0
C14 B:CRL998 1.8 16.2 1.0
C6 B:CRL998 2.9 12.8 1.0
N1 B:CRL998 3.4 15.0 1.0
O B:GLY66 4.2 13.6 1.0
C7 B:CRL998 4.2 16.1 1.0
C1 B:CRL998 4.5 14.4 1.0
O B:ASN158 4.7 14.0 1.0
C B:ASN158 4.8 13.8 1.0
SD B:MET68 4.8 14.8 1.0
O3 B:CRL998 4.9 10.6 1.0
N B:GLY160 4.9 14.1 1.0
N3 B:CRL998 5.0 13.7 1.0
CG2 B:VAL157 5.0 11.5 1.0

Reference:

J.R.Somoza, J.R.Somoza. N/A N/A.
Page generated: Wed Dec 16 02:09:29 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy