Atomistry » Silicon » PDB 1fuq-7zpw » 7zbb
Atomistry »
  Silicon »
    PDB 1fuq-7zpw »
      7zbb »

Silicon in PDB 7zbb: Halotag with Traq-G-Ctrl Ligand

Enzymatic activity of Halotag with Traq-G-Ctrl Ligand

All present enzymatic activity of Halotag with Traq-G-Ctrl Ligand:
3.8.1.5;

Protein crystallography data

The structure of Halotag with Traq-G-Ctrl Ligand, PDB code: 7zbb was solved by S.Hubner, P.Rivera-Fuentes, F.Pojer, K.Lau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.30 / 1.95
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 94.01, 94.01, 132.562, 90, 90, 120
R / Rfree (%) 18.2 / 22

Other elements in 7zbb:

The structure of Halotag with Traq-G-Ctrl Ligand also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Silicon Binding Sites:

The binding sites of Silicon atom in the Halotag with Traq-G-Ctrl Ligand (pdb code 7zbb). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Halotag with Traq-G-Ctrl Ligand, PDB code: 7zbb:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in 7zbb

Go back to Silicon Binding Sites List in 7zbb
Silicon binding site 1 out of 2 in the Halotag with Traq-G-Ctrl Ligand


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Halotag with Traq-G-Ctrl Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si401

b:44.7
occ:1.00
SI17 A:ILJ401 0.0 44.7 1.0
C05 A:ILJ401 1.8 34.2 1.0
C10 A:ILJ401 1.8 31.1 1.0
C19 A:ILJ401 1.9 31.1 1.0
C18 A:ILJ401 1.9 37.6 1.0
H192 A:ILJ401 2.5 37.3 1.0
H193 A:ILJ401 2.5 37.3 1.0
H191 A:ILJ401 2.5 37.3 1.0
H183 A:ILJ401 2.5 45.1 1.0
H181 A:ILJ401 2.5 45.1 1.0
H182 A:ILJ401 2.5 45.1 1.0
C09 A:ILJ401 2.8 35.6 1.0
C04 A:ILJ401 2.8 33.7 1.0
C06 A:ILJ401 2.8 33.3 1.0
C11 A:ILJ401 2.8 32.7 1.0
H041 A:ILJ401 2.9 40.5 1.0
H111 A:ILJ401 2.9 39.3 1.0
C08 A:ILJ401 3.1 32.5 1.0
C03 A:ILJ401 4.1 33.3 1.0
C14 A:ILJ401 4.1 33.3 1.0
C07 A:ILJ401 4.1 31.2 1.0
C12 A:ILJ401 4.1 30.6 1.0
O A:HOH540 4.5 43.1 1.0
C02 A:ILJ401 4.6 31.2 1.0
C13 A:ILJ401 4.6 36.3 1.0
C20 A:ILJ401 4.7 40.0 1.0
CG2 A:VAL167 4.7 20.9 1.0
H141 A:ILJ401 4.9 40.0 1.0
H071 A:ILJ401 4.9 37.5 1.0

Silicon binding site 2 out of 2 in 7zbb

Go back to Silicon Binding Sites List in 7zbb
Silicon binding site 2 out of 2 in the Halotag with Traq-G-Ctrl Ligand


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Halotag with Traq-G-Ctrl Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si401

b:29.2
occ:1.00
SI17 B:ILJ401 0.0 29.2 1.0
C10 B:ILJ401 1.8 25.6 1.0
C05 B:ILJ401 1.8 24.8 1.0
C18 B:ILJ401 1.9 31.0 1.0
C19 B:ILJ401 1.9 30.6 1.0
H182 B:ILJ401 2.5 37.2 1.0
H181 B:ILJ401 2.5 37.2 1.0
H183 B:ILJ401 2.5 37.2 1.0
H193 B:ILJ401 2.5 36.8 1.0
H192 B:ILJ401 2.5 36.8 1.0
H191 B:ILJ401 2.5 36.8 1.0
C09 B:ILJ401 2.7 26.1 1.0
C06 B:ILJ401 2.8 27.5 1.0
C11 B:ILJ401 2.8 28.7 1.0
C04 B:ILJ401 2.8 27.3 1.0
H041 B:ILJ401 3.0 32.8 1.0
H111 B:ILJ401 3.0 34.4 1.0
C08 B:ILJ401 3.1 26.3 1.0
C14 B:ILJ401 4.1 27.4 1.0
C07 B:ILJ401 4.1 27.5 1.0
C12 B:ILJ401 4.1 24.4 1.0
C03 B:ILJ401 4.1 27.4 1.0
C13 B:ILJ401 4.6 27.4 1.0
C20 B:ILJ401 4.6 28.2 1.0
C02 B:ILJ401 4.6 25.5 1.0
CG2 B:VAL167 4.8 21.3 1.0
H141 B:ILJ401 4.9 32.9 1.0
H071 B:ILJ401 4.9 33.0 1.0

Reference:

S.Hubner, G.Quargnali, S.Thallmair, P.Rivera-Fuentes. A Locally Activatable Sensor For Robust Quantification of Organellar Glutathione Biorxiv 2022.
ISSN: ISSN 2692-8205
DOI: 10.1101/2022.04.01.486692
Page generated: Fri Apr 7 20:00:15 2023

Last articles

Cl in 1T5D
Cl in 1T4E
Cl in 1T3P
Cl in 1T4V
Cl in 1T3C
Cl in 1T34
Cl in 1T3A
Cl in 1T1S
Cl in 1T0J
Cl in 1T0H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy