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Silicon in PDB 6m6d: Structure of Hppd Complexed with A Synthesized Inhibitor

Enzymatic activity of Structure of Hppd Complexed with A Synthesized Inhibitor

All present enzymatic activity of Structure of Hppd Complexed with A Synthesized Inhibitor:
1.13.11.27;

Protein crystallography data

The structure of Structure of Hppd Complexed with A Synthesized Inhibitor, PDB code: 6m6d was solved by H.-Y.Lin, W.-C.Yang, G.-F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.70 / 1.84
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.568, 83.736, 61.96, 90, 100.47, 90
R / Rfree (%) 18.3 / 21.5

Other elements in 6m6d:

The structure of Structure of Hppd Complexed with A Synthesized Inhibitor also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Silicon Binding Sites:

The binding sites of Silicon atom in the Structure of Hppd Complexed with A Synthesized Inhibitor (pdb code 6m6d). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total only one binding site of Silicon was determined in the Structure of Hppd Complexed with A Synthesized Inhibitor, PDB code: 6m6d:

Silicon binding site 1 out of 1 in 6m6d

Go back to Silicon Binding Sites List in 6m6d
Silicon binding site 1 out of 1 in the Structure of Hppd Complexed with A Synthesized Inhibitor


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Structure of Hppd Complexed with A Synthesized Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si502

b:61.0
occ:1.00
SI A:NJX502 0.0 61.0 1.0
C27 A:NJX502 1.9 49.7 1.0
C30 A:NJX502 1.9 61.2 1.0
C29 A:NJX502 1.9 53.2 1.0
C31 A:NJX502 1.9 56.2 1.0
C26 A:NJX502 3.1 43.7 1.0
NH2 A:ARG290 4.4 56.5 1.0
CZ A:ARG290 4.5 56.8 1.0
C25 A:NJX502 4.6 34.4 1.0
NH1 A:ARG290 4.6 47.9 1.0
NE A:ARG290 4.9 63.9 1.0
CE A:MET335 4.9 33.4 1.0

Reference:

H.-Y.Lin, W.-C.Yang, G.-F.Yang. Structure of Hppd Complexed with A Synthesized Inhibitor To Be Published.
Page generated: Sat Apr 3 18:02:08 2021

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