Chemical elements
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    Chemical Properties
    PDB 1fuq-4ehr
      1fuq
      1fv2
      1fv3
      1nd0
      1tuj
      1xz0
      1y3g
      2fud
      2hrl
      2zy0
      4ehr

Silicon in the structure of Siglec-7 in Complex With GT1B (pdb 2hrl)






The binding sites of Silicon atom in the structure of Siglec-7 in Complex With GT1B (pdb code 2hrl). This binding sites where shown with 5.0 Angstroms radius around Silicon atom.
The 2hrl structure was solved by H.ATTRILL, A.IMAMURA, R.S.SHARMA, M.KISO, P.R.CROCKER, D.M.F.VAN AALTEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)15.0-1.9
Space groupP3221
a (A)46.021
b (A)46.021
c (A)106.474
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)19.5
Rfree (%)23.4


Silicon Binding Sites:

Silicon binding site 1 out of 1 in 2hrl


Silicon binding site 1 out of 1 in 2hrl
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stereopicture of Silicon binding site 1 out of 1 in 2hrl
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Silicon in the PDB 2hrl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silicon atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr64, A: Phe66, A: Trp74, A: Glu126, A: Bgc205, A: Ceq206,

conact list:


AtomAtomDistance (A)
SiCE2 A:Tyr644.29
SiCD2 A:Tyr644.73
SiCZ A:Tyr644.37
SiCE1 A:Tyr644.86
SiOH A:Tyr644.59
SiCZ A:Phe664.65
SiO A:Trp743.99
SiOE2 A:Glu1264.51
SiC1 A:Bgc2054.96
SiO1 A:Bgc2054.14
SiC6 A:Ceq2062.82
SiSI1 A:Ceq2060.00
SiC5 A:Ceq2061.87
SiC4 A:Ceq2061.86
SiC3 A:Ceq2061.88
SiC2 A:Ceq2061.87

interactive model:




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