Atomistry » Silicon » PDB 1fuq-7ckg » 6u2m
Atomistry »
  Silicon »
    PDB 1fuq-7ckg »
      6u2m »

Silicon in PDB 6u2m: Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635

Protein crystallography data

The structure of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635, PDB code: 6u2m was solved by C.Deo, E.R.Schreiter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 122.58 / 2.00
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.560, 60.662, 122.600, 90.00, 91.02, 90.00
R / Rfree (%) 18.6 / 22.6

Other elements in 6u2m:

The structure of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Calcium (Ca) 8 atoms
Chlorine (Cl) 2 atoms

Silicon Binding Sites:

The binding sites of Silicon atom in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 (pdb code 6u2m). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635, PDB code: 6u2m:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in 6u2m

Go back to Silicon Binding Sites List in 6u2m
Silicon binding site 1 out of 2 in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si600

b:83.7
occ:1.00
SI1 A:PUJ600 0.0 83.7 1.0
C4 A:PUJ600 1.8 75.8 1.0
C40 A:PUJ600 1.8 78.0 1.0
C1 A:PUJ600 1.9 79.5 1.0
C3 A:PUJ600 1.9 87.9 1.0
C32 A:PUJ600 2.8 88.6 1.0
C12 A:PUJ600 2.8 74.2 1.0
C5 A:PUJ600 2.8 77.4 1.0
C39 A:PUJ600 2.8 81.2 1.0
C13 A:PUJ600 3.1 87.1 1.0
C11 A:PUJ600 4.1 74.3 1.0
C6 A:PUJ600 4.1 78.6 1.0
C33 A:PUJ600 4.1 77.4 1.0
C35 A:PUJ600 4.1 79.0 1.0
CA A:GLY54 4.5 59.6 1.0
C14 A:PUJ600 4.6 97.8 1.0
C10 A:PUJ600 4.6 71.3 1.0
C34 A:PUJ600 4.6 78.1 1.0
N A:GLY54 4.7 61.1 1.0

Silicon binding site 2 out of 2 in 6u2m

Go back to Silicon Binding Sites List in 6u2m
Silicon binding site 2 out of 2 in the Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2, Bound to JF635 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Si600

b:0.2
occ:1.00
SI1 C:PUJ600 0.0 0.2 1.0
C4 C:PUJ600 1.8 87.5 1.0
C40 C:PUJ600 1.8 98.6 1.0
C1 C:PUJ600 1.9 96.4 1.0
C3 C:PUJ600 1.9 0.1 1.0
C5 C:PUJ600 2.8 85.3 1.0
C12 C:PUJ600 2.8 90.2 1.0
C39 C:PUJ600 2.8 88.2 1.0
C32 C:PUJ600 2.8 0.2 1.0
C13 C:PUJ600 3.1 0.0 1.0
C6 C:PUJ600 4.1 83.2 1.0
C11 C:PUJ600 4.1 82.2 1.0
C35 C:PUJ600 4.1 90.9 1.0
C33 C:PUJ600 4.1 92.6 1.0
CA C:GLY54 4.5 58.4 1.0
C14 C:PUJ600 4.6 0.7 1.0
C10 C:PUJ600 4.6 75.4 1.0
C34 C:PUJ600 4.6 91.7 1.0
O C:GLU53 4.9 59.9 1.0
N C:GLY54 4.9 56.2 1.0

Reference:

C.Deo, L.D.Lavis, E.R.Schreiter. Crystal Structure of A Halotag-Based Calcium Indicator, Halocamp V2 To Be Published.
Page generated: Wed Dec 16 02:09:37 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy