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Silicon in PDB 7ckg: Crystal Structure of Tmsiphers Complexed with Tmsiphe

Enzymatic activity of Crystal Structure of Tmsiphers Complexed with Tmsiphe

All present enzymatic activity of Crystal Structure of Tmsiphers Complexed with Tmsiphe:
6.1.1.1;

Protein crystallography data

The structure of Crystal Structure of Tmsiphers Complexed with Tmsiphe, PDB code: 7ckg was solved by J.P.Sun, J.Y.Wang, Z.L.Zhu, Q.T.He, P.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.22 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.102, 83.426, 106.235, 90, 90, 90
R / Rfree (%) 20.7 / 26

Silicon Binding Sites:

The binding sites of Silicon atom in the Crystal Structure of Tmsiphers Complexed with Tmsiphe (pdb code 7ckg). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total only one binding site of Silicon was determined in the Crystal Structure of Tmsiphers Complexed with Tmsiphe, PDB code: 7ckg:

Silicon binding site 1 out of 1 in 7ckg

Go back to Silicon Binding Sites List in 7ckg
Silicon binding site 1 out of 1 in the Crystal Structure of Tmsiphers Complexed with Tmsiphe


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of Tmsiphers Complexed with Tmsiphe within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si501

b:56.6
occ:1.00
SI1 B:TSQ501 0.0 56.6 1.0
C2 B:TSQ501 1.9 33.3 1.0
C3 B:TSQ501 1.9 40.2 1.0
C1 B:TSQ501 1.9 52.8 1.0
CZ B:TSQ501 1.9 49.0 1.0
CE1 B:TSQ501 2.8 45.1 1.0
CE2 B:TSQ501 2.9 45.1 1.0
CG B:GLN155 4.1 22.4 1.0
CD1 B:TSQ501 4.1 41.1 1.0
CD2 B:TSQ501 4.2 45.1 1.0
O B:GLN155 4.3 19.8 1.0
N B:GLY34 4.5 24.5 1.0
ND1 B:HIS32 4.5 43.9 1.0
CA B:GLY34 4.6 24.5 1.0
N B:GLY159 4.6 34.4 1.0
CG B:TSQ501 4.7 41.8 1.0
CD2 B:LEU162 4.7 43.3 1.0
CD B:GLN155 4.7 24.1 1.0
NE2 B:GLN155 4.8 27.1 1.0
CG2 B:VAL65 4.8 24.2 1.0
C B:ILE33 4.9 23.1 1.0
NE2 B:GLN70 5.0 32.5 1.0
C B:GLY158 5.0 36.0 1.0
CB B:VAL65 5.0 30.1 1.0
CE1 B:HIS32 5.0 36.0 1.0

Reference:

Q.Liu, Q.T.He, X.Lyu, F.Yang, Z.L.Zhu, P.Xiao, Z.Yang, F.Zhang, Z.Y.Yang, X.Y.Wang, P.Sun, Q.W.Wang, C.X.Qu, Z.Gong, J.Y.Lin, Z.Xu, S.L.Song, S.M.Huang, S.C.Guo, M.J.Han, K.K.Zhu, X.Chen, A.W.Kahsai, K.H.Xiao, W.Kong, F.H.Li, K.Ruan, Z.J.Li, X.Yu, X.G.Niu, C.W.Jin, J.Wang, J.P.Sun. Desiphering Receptor Core-Induced and Ligand-Dependent Conformational Changes in Arrestin Via Genetic Encoded Trimethylsilyl 1 H-uc(Nmr) Probe. Nat Commun V. 11 4857 2020.
ISSN: ESSN 2041-1723
PubMed: 32978402
DOI: 10.1038/S41467-020-18433-5
Page generated: Sat Apr 3 18:02:22 2021

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