Silicon in PDB 7ax2: Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2 was solved by B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.21 / 2.10
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	133.517, 133.517, 70.093, 90, 90, 90
R / Rfree (%)	17.8 / 20.6

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B also contains other interesting chemical elements:

Sodium	(Na)	1 atom
Tungsten	(W)	23 atoms

The binding sites of Silicon atom in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B (pdb code 7ax2). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B within 5.0Å range: probe atom residue distance (Å) B Occ A:Si401 b:22.3 occ:1.00 SI1 A:SIW401 0.0 22.3 1.0 O19E A:SIW401 1.5 22.3 1.0 O4 A:SIW401 1.5 22.3 1.0 O21 A:SIW401 1.7 22.3 1.0 O22 A:SIW401 1.7 22.3 1.0 O16E A:SIW401 3.4 22.3 1.0 O9 A:SIW401 3.5 22.3 1.0 O18E A:SIW401 3.5 22.3 1.0 W3E A:SIW401 3.5 22.3 1.0 W4E A:SIW401 3.5 22.3 1.0 W5E A:SIW401 3.5 22.3 1.0 W2E A:SIW401 3.5 22.3 1.0 O17E A:SIW401 3.5 22.3 1.0 W2 A:SIW401 3.5 22.3 1.0 W1 A:SIW401 3.5 22.3 1.0 W7 A:SIW401 3.5 22.3 1.0 O8 A:SIW401 3.5 22.3 1.0 W1E A:SIW401 3.5 22.3 1.0 O23E A:SIW401 3.5 22.3 1.0 W4 A:SIW401 3.6 22.3 1.0 O20E A:SIW401 3.6 22.3 1.0 O2 A:SIW401 3.6 22.3 1.0 W6 A:SIW401 3.6 22.3 1.0 W5 A:SIW401 3.6 22.3 1.0 W3 A:SIW401 3.6 22.3 1.0 O1 A:SIW401 3.6 22.3 1.0 O7E A:SIW401 3.6 22.3 1.0 O15E A:SIW401 3.7 22.3 1.0 O18 A:SIW401 3.7 22.3 1.0 O9E A:SIW401 3.8 22.3 1.0 O3E A:SIW401 3.8 22.3 1.0 O16 A:SIW401 3.8 22.3 1.0 O2E A:SIW401 3.8 22.3 1.0 O17 A:SIW401 3.8 22.3 1.0 O8E A:SIW401 3.8 22.3 1.0 O20 A:SIW401 3.9 22.3 1.0 O1E A:SIW401 3.9 22.3 1.0 O23 A:SIW401 3.9 22.3 1.0 O7 A:SIW401 4.0 22.3 1.0 O15 A:SIW401 4.1 22.3 1.0 O3 A:SIW401 4.1 22.3 1.0

Silicon binding site 2 out of 2 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B within 5.0Å range: probe atom residue distance (Å) B Occ A:Si402 b:26.8 occ:0.50 SI1 A:S5T402 0.0 26.8 0.5 O19E A:S5T402 1.5 26.8 0.5 O4 A:S5T402 1.5 26.8 0.5 O22 A:S5T402 1.7 26.8 0.5 O21 A:S5T402 1.7 26.8 0.5 W3E A:S5T402 3.4 26.8 0.5 W2E A:S5T402 3.5 26.8 0.5 W7 A:S5T402 3.5 26.8 0.5 O9 A:S5T402 3.5 26.8 0.5 W1 A:S5T402 3.5 26.8 0.5 W2 A:S5T402 3.5 26.8 0.5 W5E A:S5T402 3.5 26.8 0.5 W1E A:S5T402 3.5 26.8 0.5 O18E A:S5T402 3.5 26.8 0.5 W5 A:S5T402 3.5 26.8 0.5 W6 A:S5T402 3.5 26.8 0.5 O17E A:S5T402 3.6 26.8 0.5 W4 A:S5T402 3.6 26.8 0.5 O8 A:S5T402 3.6 26.8 0.5 W3 A:S5T402 3.6 26.8 0.5 O20E A:S5T402 3.6 26.8 0.5 O9E A:S5T402 3.6 26.8 0.5 O23E A:S5T402 3.6 26.8 0.5 O16 A:S5T402 3.6 26.8 0.5 O2 A:S5T402 3.6 26.8 0.5 O8E A:S5T402 3.7 26.8 0.5 O18 A:S5T402 3.7 26.8 0.5 O1 A:S5T402 3.7 26.8 0.5 O20 A:S5T402 3.7 26.8 0.5 O16E A:S5T402 3.7 26.8 0.5 O7E A:S5T402 3.7 26.8 0.5 O23 A:S5T402 3.8 26.8 0.5 O1E A:S5T402 3.8 26.8 0.5 O17 A:S5T402 3.8 26.8 0.5 O15E A:S5T402 3.8 26.8 0.5 O2E A:S5T402 3.9 26.8 0.5 O7 A:S5T402 3.9 26.8 0.5 O3E A:S5T402 3.9 26.8 0.5 O15 A:S5T402 4.0 26.8 0.5 O3 A:S5T402 4.1 26.8 0.5 NA A:NA403 4.5 21.1 0.5

B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet. Crystal Structure of the Computationally Designed Scone-E Protein Co-Crystallized with Sta, Form B To Be Published.