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Silicon in PDB 7ax2: Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B

Protein crystallography data

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2 was solved by B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.21 / 2.10
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 133.517, 133.517, 70.093, 90, 90, 90
R / Rfree (%) 17.8 / 20.6

Other elements in 7ax2:

The structure of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B also contains other interesting chemical elements:

Sodium (Na) 1 atom
Tungsten (W) 23 atoms

Silicon Binding Sites:

The binding sites of Silicon atom in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B (pdb code 7ax2). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 2 binding sites of Silicon where determined in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B, PDB code: 7ax2:
Jump to Silicon binding site number: 1; 2;

Silicon binding site 1 out of 2 in 7ax2

Go back to Silicon Binding Sites List in 7ax2
Silicon binding site 1 out of 2 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si401

b:22.3
occ:1.00
SI1 A:SIW401 0.0 22.3 1.0
O19E A:SIW401 1.5 22.3 1.0
O4 A:SIW401 1.5 22.3 1.0
O21 A:SIW401 1.7 22.3 1.0
O22 A:SIW401 1.7 22.3 1.0
O16E A:SIW401 3.4 22.3 1.0
O9 A:SIW401 3.5 22.3 1.0
O18E A:SIW401 3.5 22.3 1.0
W3E A:SIW401 3.5 22.3 1.0
W4E A:SIW401 3.5 22.3 1.0
W5E A:SIW401 3.5 22.3 1.0
W2E A:SIW401 3.5 22.3 1.0
O17E A:SIW401 3.5 22.3 1.0
W2 A:SIW401 3.5 22.3 1.0
W1 A:SIW401 3.5 22.3 1.0
W7 A:SIW401 3.5 22.3 1.0
O8 A:SIW401 3.5 22.3 1.0
W1E A:SIW401 3.5 22.3 1.0
O23E A:SIW401 3.5 22.3 1.0
W4 A:SIW401 3.6 22.3 1.0
O20E A:SIW401 3.6 22.3 1.0
O2 A:SIW401 3.6 22.3 1.0
W6 A:SIW401 3.6 22.3 1.0
W5 A:SIW401 3.6 22.3 1.0
W3 A:SIW401 3.6 22.3 1.0
O1 A:SIW401 3.6 22.3 1.0
O7E A:SIW401 3.6 22.3 1.0
O15E A:SIW401 3.7 22.3 1.0
O18 A:SIW401 3.7 22.3 1.0
O9E A:SIW401 3.8 22.3 1.0
O3E A:SIW401 3.8 22.3 1.0
O16 A:SIW401 3.8 22.3 1.0
O2E A:SIW401 3.8 22.3 1.0
O17 A:SIW401 3.8 22.3 1.0
O8E A:SIW401 3.8 22.3 1.0
O20 A:SIW401 3.9 22.3 1.0
O1E A:SIW401 3.9 22.3 1.0
O23 A:SIW401 3.9 22.3 1.0
O7 A:SIW401 4.0 22.3 1.0
O15 A:SIW401 4.1 22.3 1.0
O3 A:SIW401 4.1 22.3 1.0

Silicon binding site 2 out of 2 in 7ax2

Go back to Silicon Binding Sites List in 7ax2
Silicon binding site 2 out of 2 in the Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Crystal Structure of the Computationally Designed Scone-E Protein Co- Crystallized with Sta, Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si402

b:26.8
occ:0.50
SI1 A:S5T402 0.0 26.8 0.5
O19E A:S5T402 1.5 26.8 0.5
O4 A:S5T402 1.5 26.8 0.5
O22 A:S5T402 1.7 26.8 0.5
O21 A:S5T402 1.7 26.8 0.5
W3E A:S5T402 3.4 26.8 0.5
W2E A:S5T402 3.5 26.8 0.5
W7 A:S5T402 3.5 26.8 0.5
O9 A:S5T402 3.5 26.8 0.5
W1 A:S5T402 3.5 26.8 0.5
W2 A:S5T402 3.5 26.8 0.5
W5E A:S5T402 3.5 26.8 0.5
W1E A:S5T402 3.5 26.8 0.5
O18E A:S5T402 3.5 26.8 0.5
W5 A:S5T402 3.5 26.8 0.5
W6 A:S5T402 3.5 26.8 0.5
O17E A:S5T402 3.6 26.8 0.5
W4 A:S5T402 3.6 26.8 0.5
O8 A:S5T402 3.6 26.8 0.5
W3 A:S5T402 3.6 26.8 0.5
O20E A:S5T402 3.6 26.8 0.5
O9E A:S5T402 3.6 26.8 0.5
O23E A:S5T402 3.6 26.8 0.5
O16 A:S5T402 3.6 26.8 0.5
O2 A:S5T402 3.6 26.8 0.5
O8E A:S5T402 3.7 26.8 0.5
O18 A:S5T402 3.7 26.8 0.5
O1 A:S5T402 3.7 26.8 0.5
O20 A:S5T402 3.7 26.8 0.5
O16E A:S5T402 3.7 26.8 0.5
O7E A:S5T402 3.7 26.8 0.5
O23 A:S5T402 3.8 26.8 0.5
O1E A:S5T402 3.8 26.8 0.5
O17 A:S5T402 3.8 26.8 0.5
O15E A:S5T402 3.8 26.8 0.5
O2E A:S5T402 3.9 26.8 0.5
O7 A:S5T402 3.9 26.8 0.5
O3E A:S5T402 3.9 26.8 0.5
O15 A:S5T402 4.0 26.8 0.5
O3 A:S5T402 4.1 26.8 0.5
NA A:NA403 4.5 21.1 0.5

Reference:

B.Mylemans, L.Vandebroek, T.N.Parac-Vogt, A.R.D.Voet. Crystal Structure of the Computationally Designed Scone-E Protein Co-Crystallized with Sta, Form B To Be Published.
Page generated: Mon Jan 25 16:02:41 2021

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