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Silicon in PDB 8gjv: Chemical Synthesis of Maxamycins: Intermediate Compound 10

Protein crystallography data

The structure of Chemical Synthesis of Maxamycins: Intermediate Compound 10, PDB code: 8gjv was solved by R.L.Stanfield, M.J.Moore, D.L.Boger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.75 / 0.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 23.582, 19.693, 51.816, 90, 96.61, 90
R / Rfree (%) 11.8 / 13.2

Other elements in 8gjv:

The structure of Chemical Synthesis of Maxamycins: Intermediate Compound 10 also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Silicon Binding Sites:

The binding sites of Silicon atom in the Chemical Synthesis of Maxamycins: Intermediate Compound 10 (pdb code 8gjv). This binding sites where shown within 5.0 Angstroms radius around Silicon atom.
In total 9 binding sites of Silicon where determined in the Chemical Synthesis of Maxamycins: Intermediate Compound 10, PDB code: 8gjv:
Jump to Silicon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Silicon binding site 1 out of 9 in 8gjv

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Silicon binding site 1 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 1 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si2

b:6.7
occ:1.00
 SI A:ZTG2 0.0 6.7 1.0
OC A:ZTG2 1.7 6.0 1.0
C4 A:ZTG2 1.9 9.3 1.0
C7 A:ZTG2 1.9 8.6 1.0
C1 A:ZTG2 1.9 8.8 1.0
H41 A:ZTG2 2.1 9.4 1.0
H71 A:ZTG2 2.3 8.4 1.0
H11 A:ZTG2 2.4 8.5 1.0
CB A:ZTG2 2.7 5.6 1.0
HB2 A:ZTG2 2.7 5.6 1.0
C5 A:ZTG2 2.8 12.0 0.8
C8 A:ZTG2 2.8 7.2 0.2
H81 A:ZTG2 2.8 7.5 0.2
C6 A:ZTG2 2.8 11.1 1.0
C9 A:ZTG2 2.9 8.9 1.0
H51 A:ZTG2 2.9 8.5 0.2
C3 A:ZTG2 2.9 10.1 1.0
C2 A:ZTG2 2.9 10.4 1.0
H61 A:ZTG2 2.9 10.7 1.0
H21 A:ZTG2 2.9 9.9 1.0
C5 A:ZTG2 2.9 8.4 0.2
H91 A:ZTG2 2.9 8.8 1.0
H53 A:ZTG2 2.9 11.3 0.8
C8 A:ZTG2 2.9 12.1 0.8
H51 A:ZTG2 3.0 10.6 0.8
H81 A:ZTG2 3.0 11.2 0.8
H31 A:ZTG2 3.0 9.4 1.0
H33 A:ZTG2 3.1 10.0 1.0
H93 A:ZTG2 3.2 9.0 1.0
H83 A:ZTG2 3.2 7.5 0.2
H22 A:ZTG2 3.2 10.3 1.0
H62 A:ZTG2 3.2 10.7 1.0
H82 A:ZTG2 3.3 11.5 0.8
H53 A:ZTG2 3.5 8.8 0.2
HA A:ZTG2 3.6 5.7 1.0
H52 A:ZTG2 3.7 8.5 0.2
H82 A:ZTG2 3.7 7.2 0.2
CG A:ZTG2 3.7 5.1 1.0
H52 A:ZTG2 3.7 11.3 0.8
H63 A:ZTG2 3.8 10.9 1.0
CA A:ZTG2 3.8 5.7 1.0
H92 A:ZTG2 3.8 8.9 1.0
H23 A:ZTG2 3.8 10.1 1.0
H32 A:ZTG2 3.8 9.6 1.0
H83 A:ZTG2 3.8 11.3 0.8
HD2 A:ZTG2 4.0 5.1 1.0
CD2 A:ZTG2 4.2 5.2 1.0
H21 A:BOC0 4.3 7.5 1.0
N A:ZTG2 4.4 5.2 1.0
CD1 A:ZTG2 4.6 5.4 1.0
H A:ZTG2 4.7 5.5 1.0
HD1 A:ZTG2 4.7 5.3 1.0

Silicon binding site 2 out of 9 in 8gjv

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Silicon binding site 2 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 2 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Si6

b:9.3
occ:1.00
 SI A:ZT66 0.0 9.3 1.0
ODE A:ZT66 1.7 7.0 1.0
C1 A:ZT66 1.8 11.0 1.0
C7 A:ZT66 1.9 14.8 1.0
C4 A:ZT66 1.9 17.2 1.0
H11 A:ZT66 2.2 11.4 1.0
H71 A:ZT66 2.4 14.1 1.0
H41 A:ZT66 2.5 15.8 1.0
CB A:ZT66 2.8 5.6 1.0
C9 A:ZT66 2.8 14.4 1.0
C3 A:ZT66 2.8 12.5 1.0
H91 A:ZT66 2.8 13.8 1.0
C8 A:ZT66 2.9 19.7 1.0
C6 A:ZT66 2.9 15.0 1.0
HB2 A:ZT66 2.9 5.7 1.0
H81 A:ZT66 2.9 18.0 1.0
H31 A:ZT66 2.9 12.4 1.0
C2 A:ZT66 2.9 16.8 1.0
H53 A:ZT66 2.9 17.4 1.0
C5 A:ZT66 2.9 18.0 1.0
H21 A:ZT66 2.9 15.3 1.0
H61 A:ZT66 3.0 15.4 1.0
H92 A:ZT66 3.1 15.0 1.0
H63 A:ZT66 3.1 13.8 1.0
H32 A:ZT66 3.2 12.1 1.0
H83 A:ZT66 3.3 18.9 1.0
H51 A:ZT66 3.4 18.4 1.0
H22 A:ZT66 3.5 15.4 1.0
HD2 A:ZT66 3.7 5.3 1.0
CG A:ZT66 3.7 5.5 1.0
H23 A:ZT66 3.7 14.2 1.0
H33 A:ZT66 3.7 12.2 1.0
H93 A:ZT66 3.8 14.0 1.0
H82 A:ZT66 3.8 19.2 1.0
H62 A:ZT66 3.8 14.9 1.0
H52 A:ZT66 3.8 17.5 1.0
CA A:ZT66 3.9 5.4 1.0
CD2 A:ZT66 4.1 5.0 1.0
C A:ZT66 4.1 5.9 1.0
H A:ZT66 4.2 4.8 1.0
HO A:MOH108 4.4 12.2 1.0
O A:ZT66 4.4 7.8 1.0
O B:ZTK3 4.5 5.9 1.0
N A:ZT66 4.6 4.8 1.0
H A:ZTC7 4.6 6.5 1.0
N A:ZTC7 4.6 6.4 1.0
HA B:ZTK3 4.7 6.1 1.0
HA A:ZT66 4.7 5.4 1.0
CL B:ZTG2 4.9 6.5 1.0
CD1 A:ZT66 4.9 5.9 1.0
HD1 B:ZTG2 5.0 5.9 1.0

Silicon binding site 3 out of 9 in 8gjv

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Silicon binding site 3 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 3 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si2

b:9.8
occ:1.00
 SI B:ZTG2 0.0 9.8 1.0
OC B:ZTG2 1.6 8.8 1.0
C1 B:ZTG2 1.8 14.0 1.0
C4 B:ZTG2 1.8 16.5 1.0
C7 B:ZTG2 1.9 11.3 1.0
H71 B:ZTG2 2.4 11.3 1.0
H41 B:ZTG2 2.4 16.1 1.0
H11 B:ZTG2 2.4 14.2 1.0
H31 B:ZTG2 2.7 18.6 1.0
C3 B:ZTG2 2.7 21.5 1.0
CB B:ZTG2 2.7 7.4 1.0
HB2 B:ZTG2 2.8 7.3 1.0
H21 B:ZTG2 2.8 17.4 1.0
C5 B:ZTG2 2.8 21.7 1.0
C6 B:ZTG2 2.8 20.7 1.0
H61 B:ZTG2 2.8 20.4 1.0
H51 B:ZTG2 2.8 20.7 1.0
C9 B:ZTG2 2.8 12.4 1.0
C2 B:ZTG2 2.9 18.2 1.0
H91 B:ZTG2 2.9 12.2 1.0
C8 B:ZTG2 2.9 21.2 1.0
H81 B:ZTG2 3.1 19.0 1.0
H33 B:ZTG2 3.1 19.4 1.0
H83 B:ZTG2 3.2 18.6 1.0
H92 B:ZTG2 3.2 12.3 1.0
H53 B:ZTG2 3.2 20.9 1.0
H62 B:ZTG2 3.2 19.3 1.0
H23 B:ZTG2 3.4 17.6 1.0
HA B:ZTG2 3.6 6.8 1.0
H32 B:ZTG2 3.7 19.1 1.0
H22 B:ZTG2 3.7 17.6 1.0
H52 B:ZTG2 3.7 20.3 1.0
H63 B:ZTG2 3.7 19.6 1.0
CA B:ZTG2 3.8 7.0 1.0
CG B:ZTG2 3.8 6.4 1.0
H93 B:ZTG2 3.8 12.1 1.0
H82 B:ZTG2 3.8 18.3 1.0
HD2 B:ZTG2 4.0 6.2 1.0
H21 B:BOC0 4.1 12.6 1.0
CD2 B:ZTG2 4.3 6.4 1.0
N B:ZTG2 4.3 6.6 1.0
HO B:MOH108 4.4 15.8 1.0
O B:MOH108 4.5 16.0 1.0
HO B:MOH104 4.6 16.2 1.0
H B:ZTG2 4.6 6.9 1.0
H23 B:BOC0 4.8 12.4 1.0
CD1 B:ZTG2 4.8 6.0 1.0
HCN3 B:MLU1 4.8 11.6 1.0
C B:MLU1 4.9 9.1 1.0
C2 B:BOC0 4.9 12.7 1.0
HD1 B:ZTG2 4.9 5.9 1.0

Silicon binding site 4 out of 9 in 8gjv

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Silicon binding site 4 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 4 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Si6

b:8.1
occ:1.00
 SI B:ZT66 0.0 8.1 1.0
ODE B:ZT66 1.7 5.1 1.0
C7 B:ZT66 1.8 10.9 0.7
C4 B:ZT66 1.8 4.3 0.3
C1 B:ZT66 1.9 7.9 0.3
C4 B:ZT66 1.9 9.2 0.7
C7 B:ZT66 2.0 8.0 0.3
C1 B:ZT66 2.1 8.7 0.7
H61 B:ZT66 2.2 7.2 0.3
H71 B:ZT66 2.3 10.7 0.7
H41 B:ZT66 2.4 8.4 0.7
C6 B:ZT66 2.4 8.7 0.3
H11 B:ZT66 2.4 8.4 0.3
H71 B:ZT66 2.5 7.8 0.3
H41 B:ZT66 2.5 4.4 0.3
C9 B:ZT66 2.6 13.9 0.7
H31 B:ZT66 2.6 11.2 0.3
H11 B:ZT66 2.6 8.4 0.7
H53 B:ZT66 2.7 10.4 0.7
H91 B:ZT66 2.7 13.3 0.7
C3 B:ZT66 2.7 13.4 0.3
CB B:ZT66 2.8 4.9 1.0
H92 B:ZT66 2.8 13.2 0.7
C5 B:ZT66 2.8 10.7 0.7
C5 B:ZT66 2.8 4.0 0.3
C3 B:ZT66 2.9 9.4 0.7
HB2 B:ZT66 2.9 5.0 1.0
C8 B:ZT66 2.9 11.3 0.7
H81 B:ZT66 2.9 11.1 0.7
H31 B:ZT66 2.9 8.7 0.7
H81 B:ZT66 2.9 7.4 0.3
H21 B:ZT66 2.9 8.6 0.3
H63 B:ZT66 2.9 7.1 0.3
C6 B:ZT66 2.9 6.4 0.7
H53 B:ZT66 3.0 4.1 0.3
C2 B:ZT66 3.0 8.8 0.3
C8 B:ZT66 3.0 7.5 0.3
H21 B:ZT66 3.0 10.0 0.7
H61 B:ZT66 3.0 6.5 0.7
H91 B:ZT66 3.1 7.7 0.3
H32 B:ZT66 3.1 9.7 0.7
H51 B:ZT66 3.1 4.1 0.3
C9 B:ZT66 3.1 7.5 0.3
C2 B:ZT66 3.1 10.4 0.7
H62 B:ZT66 3.3 7.3 0.3
H33 B:ZT66 3.3 10.5 0.3
H62 B:ZT66 3.3 6.7 0.7
H83 B:ZT66 3.5 11.4 0.7
H51 B:ZT66 3.5 10.3 0.7
H32 B:ZT66 3.5 11.3 0.3
H52 B:ZT66 3.5 10.3 0.7
H93 B:ZT66 3.6 13.2 0.7
H23 B:ZT66 3.6 8.7 0.3
H93 B:ZT66 3.6 7.7 0.3
H82 B:ZT66 3.7 11.1 0.7
H82 B:ZT66 3.7 7.6 0.3
H52 B:ZT66 3.7 4.0 0.3
H22 B:ZT66 3.8 8.9 0.3
H23 B:ZT66 3.8 10.4 0.7
H83 B:ZT66 3.8 7.6 0.3
HD2 B:ZT66 3.8 5.1 1.0
CG B:ZT66 3.8 5.1 1.0
H63 B:ZT66 3.8 6.5 0.7
H33 B:ZT66 3.9 9.3 0.7
CA B:ZT66 3.9 4.4 1.0
H92 B:ZT66 3.9 7.3 0.3
H22 B:ZT66 3.9 10.1 0.7
C B:ZT66 4.0 4.4 1.0
CD2 B:ZT66 4.2 5.1 1.0
HO B:MOH101 4.2 8.2 1.0
H B:ZT66 4.3 4.2 1.0
O B:ZT66 4.3 5.6 1.0
H B:ZTC7 4.4 4.7 1.0
N B:ZTC7 4.5 4.5 1.0
O A:ZTK3 4.5 5.0 1.0
N B:ZT66 4.6 4.2 1.0
HA B:ZT66 4.7 4.5 1.0
O2 B:ZTC7 4.8 6.9 1.0
HA A:ZTK3 4.8 5.5 1.0
HD1 A:ZTG2 4.9 5.3 1.0
O B:MOH101 4.9 8.2 1.0
CD1 B:ZT66 4.9 5.2 1.0

Silicon binding site 5 out of 9 in 8gjv

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Silicon binding site 5 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 5 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Si2

b:6.8
occ:1.00
 SI C:ZTG2 0.0 6.8 1.0
OC C:ZTG2 1.6 5.8 1.0
C1 C:ZTG2 1.9 8.8 1.0
C7 C:ZTG2 1.9 9.6 1.0
C4 C:ZTG2 1.9 8.6 1.0
H11 C:ZTG2 2.4 8.7 1.0
H71 C:ZTG2 2.4 9.0 1.0
H41 C:ZTG2 2.4 8.1 1.0
CB C:ZTG2 2.7 5.7 1.0
HB2 C:ZTG2 2.7 5.8 1.0
H21 C:ZTG2 2.8 10.7 1.0
C9 C:ZTG2 2.8 10.7 1.0
C5 C:ZTG2 2.8 10.8 1.0
C2 C:ZTG2 2.8 11.6 1.0
C3 C:ZTG2 2.9 9.5 1.0
C8 C:ZTG2 2.9 12.1 1.0
H51 C:ZTG2 2.9 10.8 1.0
C6 C:ZTG2 2.9 8.3 1.0
H91 C:ZTG2 2.9 10.2 1.0
H81 C:ZTG2 2.9 11.5 1.0
H31 C:ZTG2 3.0 9.6 1.0
H61 C:ZTG2 3.0 8.1 1.0
H92 C:ZTG2 3.1 9.9 1.0
H33 C:ZTG2 3.1 9.3 1.0
H63 C:ZTG2 3.1 8.5 1.0
H53 C:ZTG2 3.1 10.4 1.0
H82 C:ZTG2 3.2 11.8 1.0
H23 C:ZTG2 3.4 11.2 1.0
HA C:ZTG2 3.6 5.4 1.0
H22 C:ZTG2 3.7 11.2 1.0
CG C:ZTG2 3.7 5.5 1.0
H93 C:ZTG2 3.8 10.3 1.0
CA C:ZTG2 3.8 5.2 1.0
H52 C:ZTG2 3.8 10.1 1.0
H32 C:ZTG2 3.8 9.2 1.0
H83 C:ZTG2 3.8 11.4 1.0
H62 C:ZTG2 3.8 8.3 1.0
HD2 C:ZTG2 4.0 5.5 1.0
CD2 C:ZTG2 4.2 5.6 1.0
N C:ZTG2 4.4 5.3 1.0
H21 C:BOC0 4.5 8.2 1.0
CD1 C:ZTG2 4.7 5.5 1.0
O C:MLU1 4.8 9.1 1.0
HD1 C:ZTG2 4.8 5.4 1.0
C C:MLU1 4.8 6.0 1.0
H C:ZTG2 4.9 5.3 1.0

Silicon binding site 6 out of 9 in 8gjv

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Silicon binding site 6 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


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Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 6 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Si6

b:7.0
occ:0.44
 SI C:ZT66 0.0 7.0 0.4
SI C:ZT66 1.1 7.8 0.6
C4 C:ZT66 1.6 9.3 0.6
H61 C:ZT66 1.7 11.4 0.6
ODE C:ZT66 1.8 7.0 1.0
C4 C:ZT66 1.9 7.3 0.4
C7 C:ZT66 1.9 7.7 0.4
C1 C:ZT66 1.9 7.6 0.4
C6 C:ZT66 1.9 12.1 0.6
C7 C:ZT66 2.0 12.3 0.6
H81 C:ZT66 2.1 16.8 0.6
H41 C:ZT66 2.2 9.2 0.6
C8 C:ZT66 2.3 17.8 0.6
H41 C:ZT66 2.3 7.6 0.4
H71 C:ZT66 2.4 7.6 0.4
H63 C:ZT66 2.4 11.5 0.6
H11 C:ZT66 2.5 7.5 0.4
H82 C:ZT66 2.6 16.6 0.6
H31 C:ZT66 2.6 7.5 0.4
HB2 C:ZT66 2.7 5.9 1.0
CB C:ZT66 2.7 5.8 1.0
H21 C:ZT66 2.7 8.9 0.4
C3 C:ZT66 2.7 7.4 0.4
H71 C:ZT66 2.7 11.7 0.6
H91 C:ZT66 2.8 7.3 0.4
C6 C:ZT66 2.8 6.4 0.4
C9 C:ZT66 2.8 7.4 0.4
C2 C:ZT66 2.8 9.1 0.4
H61 C:ZT66 2.9 6.6 0.4
C5 C:ZT66 2.9 8.3 0.6
H62 C:ZT66 2.9 11.7 0.6
C8 C:ZT66 2.9 7.6 0.4
C5 C:ZT66 2.9 9.4 0.4
C1 C:ZT66 3.0 9.3 0.6
H53 C:ZT66 3.0 8.2 0.6
H81 C:ZT66 3.0 7.7 0.4
H53 C:ZT66 3.1 9.0 0.4
H91 C:ZT66 3.1 14.6 0.6
C9 C:ZT66 3.1 16.0 0.6
H62 C:ZT66 3.1 6.4 0.4
H82 C:ZT66 3.2 7.7 0.4
H51 C:ZT66 3.2 8.8 0.4
H32 C:ZT66 3.2 7.2 0.4
H92 C:ZT66 3.3 7.4 0.4
H83 C:ZT66 3.4 15.9 0.6
H11 C:ZT66 3.4 8.8 0.6
CG C:ZT66 3.5 5.8 1.0
H52 C:ZT66 3.5 8.3 0.6
H23 C:ZT66 3.6 8.7 0.4
H51 C:ZT66 3.6 8.5 0.6
H22 C:ZT66 3.6 8.9 0.4
H21 C:ZT66 3.6 10.5 0.6
H33 C:ZT66 3.6 7.4 0.4
HD2 C:ZT66 3.7 6.0 1.0
H93 C:ZT66 3.7 7.5 0.4
H31 C:ZT66 3.7 8.8 0.6
H63 C:ZT66 3.8 6.6 0.4
C2 C:ZT66 3.8 10.7 0.6
H92 C:ZT66 3.8 15.2 0.6
H93 C:ZT66 3.8 14.3 0.6
H52 C:ZT66 3.8 9.1 0.4
H83 C:ZT66 3.9 7.7 0.4
C3 C:ZT66 3.9 8.5 0.6
CD2 C:ZT66 3.9 6.2 1.0
CA C:ZT66 4.0 5.2 1.0
H22 C:ZT66 4.1 10.6 0.6
H32 C:ZT66 4.3 8.8 0.6
C C:ZT66 4.4 5.5 1.0
H C:ZT66 4.5 5.0 1.0
CD1 C:ZT66 4.5 5.8 1.0
O C:MOH104 4.6 8.4 1.0
H C:ZTC7 4.6 5.8 1.0
N C:ZT66 4.7 5.0 1.0
HA C:ZT66 4.7 5.4 1.0
CL D:ZTG2 4.7 6.9 1.0
HD1 C:ZT66 4.7 5.6 1.0
H23 C:ZT66 4.8 10.3 0.6
N C:ZTC7 4.8 5.8 1.0
H2 C:MOH104 4.8 8.3 1.0
H33 C:ZT66 4.8 8.8 0.6
O D:ZTK3 4.8 6.3 1.0
O C:ZT66 4.8 6.4 1.0
HO C:MOH104 4.8 8.2 1.0

Silicon binding site 7 out of 9 in 8gjv

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Silicon binding site 7 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 7 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Si6

b:7.8
occ:0.56
 SI C:ZT66 0.0 7.8 0.6
SI C:ZT66 1.1 7.0 0.4
H31 C:ZT66 1.6 7.5 0.4
ODE C:ZT66 1.7 7.0 1.0
C4 C:ZT66 1.7 7.3 0.4
C1 C:ZT66 1.9 9.3 0.6
C7 C:ZT66 1.9 12.3 0.6
C4 C:ZT66 1.9 9.3 0.6
C1 C:ZT66 2.0 7.6 0.4
H53 C:ZT66 2.0 9.0 0.4
C3 C:ZT66 2.1 7.4 0.4
C5 C:ZT66 2.1 9.4 0.4
H41 C:ZT66 2.4 7.6 0.4
H41 C:ZT66 2.4 9.2 0.6
H11 C:ZT66 2.4 8.8 0.6
H51 C:ZT66 2.5 8.8 0.4
H71 C:ZT66 2.5 11.7 0.6
H91 C:ZT66 2.7 14.6 0.6
C9 C:ZT66 2.7 16.0 0.6
H31 C:ZT66 2.8 8.8 0.6
H32 C:ZT66 2.8 7.2 0.4
H61 C:ZT66 2.8 11.4 0.6
C3 C:ZT66 2.8 8.5 0.6
H11 C:ZT66 2.8 7.5 0.4
H21 C:ZT66 2.8 10.5 0.6
C2 C:ZT66 2.8 10.7 0.6
C6 C:ZT66 2.8 12.1 0.6
CB C:ZT66 2.9 5.8 1.0
C8 C:ZT66 2.9 17.8 0.6
H53 C:ZT66 2.9 8.2 0.6
H81 C:ZT66 2.9 16.8 0.6
H21 C:ZT66 2.9 8.9 0.4
C5 C:ZT66 2.9 8.3 0.6
C6 C:ZT66 2.9 6.4 0.4
C2 C:ZT66 2.9 9.1 0.4
H33 C:ZT66 3.0 7.4 0.4
HB2 C:ZT66 3.0 5.9 1.0
C7 C:ZT66 3.0 7.7 0.4
H62 C:ZT66 3.1 6.4 0.4
H52 C:ZT66 3.1 9.1 0.4
H93 C:ZT66 3.1 14.3 0.6
H82 C:ZT66 3.2 16.6 0.6
H32 C:ZT66 3.2 8.8 0.6
H22 C:ZT66 3.3 10.6 0.6
H61 C:ZT66 3.3 6.6 0.4
H51 C:ZT66 3.3 8.5 0.6
H63 C:ZT66 3.3 11.5 0.6
H22 C:ZT66 3.4 8.9 0.4
H71 C:ZT66 3.4 7.6 0.4
H92 C:ZT66 3.6 15.2 0.6
H33 C:ZT66 3.7 8.8 0.6
H91 C:ZT66 3.7 7.3 0.4
H62 C:ZT66 3.7 11.7 0.6
H63 C:ZT66 3.8 6.6 0.4
H23 C:ZT66 3.8 10.3 0.6
H52 C:ZT66 3.8 8.3 0.6
H83 C:ZT66 3.8 15.9 0.6
H81 C:ZT66 3.8 7.7 0.4
CA C:ZT66 3.8 5.2 1.0
H23 C:ZT66 3.9 8.7 0.4
C C:ZT66 3.9 5.5 1.0
C8 C:ZT66 3.9 7.6 0.4
HD2 C:ZT66 3.9 6.0 1.0
C9 C:ZT66 3.9 7.4 0.4
CG C:ZT66 3.9 5.8 1.0
H82 C:ZT66 4.1 7.7 0.4
H C:ZT66 4.1 5.0 1.0
O C:ZT66 4.1 6.4 1.0
H92 C:ZT66 4.3 7.4 0.4
CD2 C:ZT66 4.3 6.2 1.0
N C:ZTC7 4.4 5.8 1.0
O D:ZTK3 4.4 6.3 1.0
H C:ZTC7 4.4 5.8 1.0
N C:ZT66 4.4 5.0 1.0
HA D:ZTK3 4.6 6.3 1.0
O2 C:ZTC7 4.6 9.3 1.0
HA C:ZT66 4.7 5.4 1.0
H93 C:ZT66 4.8 7.5 0.4
H83 C:ZT66 4.9 7.7 0.4

Silicon binding site 8 out of 9 in 8gjv

Go back to Silicon Binding Sites List in 8gjv
Silicon binding site 8 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 8 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Si2

b:6.7
occ:1.00
 SI D:ZTG2 0.0 6.7 1.0
OC D:ZTG2 1.6 6.2 1.0
C7 D:ZTG2 1.8 7.9 1.0
C4 D:ZTG2 1.9 8.9 1.0
C1 D:ZTG2 1.9 7.6 1.0
H71 D:ZTG2 2.4 7.9 1.0
H41 D:ZTG2 2.4 9.0 1.0
H11 D:ZTG2 2.4 7.8 1.0
CB D:ZTG2 2.7 6.3 1.0
HB2 D:ZTG2 2.7 6.3 1.0
C8 D:ZTG2 2.8 8.9 1.0
C6 D:ZTG2 2.8 10.9 1.0
C9 D:ZTG2 2.8 9.9 1.0
H51 D:ZTG2 2.8 11.0 1.0
H81 D:ZTG2 2.8 8.8 1.0
C5 D:ZTG2 2.9 11.8 1.0
C2 D:ZTG2 2.9 9.6 1.0
C3 D:ZTG2 2.9 8.2 1.0
H21 D:ZTG2 2.9 9.1 1.0
H31 D:ZTG2 2.9 8.2 1.0
H61 D:ZTG2 3.0 10.4 1.0
H91 D:ZTG2 3.0 9.6 1.0
H63 D:ZTG2 3.0 10.5 1.0
H92 D:ZTG2 3.1 9.6 1.0
H82 D:ZTG2 3.1 8.9 1.0
H22 D:ZTG2 3.2 9.4 1.0
H32 D:ZTG2 3.3 8.0 1.0
H52 D:ZTG2 3.3 11.2 1.0
CG D:ZTG2 3.6 5.8 1.0
HA D:ZTG2 3.7 6.5 1.0
H83 D:ZTG2 3.7 8.7 1.0
H53 D:ZTG2 3.8 11.2 1.0
H62 D:ZTG2 3.8 10.4 1.0
H93 D:ZTG2 3.8 9.3 1.0
H23 D:ZTG2 3.8 9.0 1.0
H33 D:ZTG2 3.8 8.2 1.0
CA D:ZTG2 3.8 6.3 1.0
HD2 D:ZTG2 4.0 5.7 1.0
CD2 D:ZTG2 4.2 5.6 1.0
N D:ZTG2 4.4 6.3 1.0
CD1 D:ZTG2 4.5 5.8 1.0
H21 D:BOC0 4.6 15.4 1.0
HD1 D:ZTG2 4.6 5.7 1.0
H D:ZTG2 4.9 6.3 1.0
HCN3 D:MLU1 4.9 13.2 1.0
O D:MLU1 4.9 12.4 1.0
C D:MLU1 4.9 7.6 1.0

Silicon binding site 9 out of 9 in 8gjv

Go back to Silicon Binding Sites List in 8gjv
Silicon binding site 9 out of 9 in the Chemical Synthesis of Maxamycins: Intermediate Compound 10


Mono view


Stereo pair view

A full contact list of Silicon with other atoms in the Si binding site number 9 of Chemical Synthesis of Maxamycins: Intermediate Compound 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Si6

b:7.2
occ:1.00
 SI D:ZT66 0.0 7.2 1.0
ODE D:ZT66 1.6 5.2 1.0
C1 D:ZT66 1.9 8.6 1.0
C4 D:ZT66 1.9 11.7 1.0
C7 D:ZT66 2.0 13.0 1.0
H11 D:ZT66 2.4 8.5 1.0
H41 D:ZT66 2.5 10.1 1.0
H71 D:ZT66 2.5 11.7 1.0
CB D:ZT66 2.8 5.1 1.0
C6 D:ZT66 2.9 13.3 1.0
C2 D:ZT66 2.9 10.2 1.0
H91 D:ZT66 2.9 9.7 1.0
C9 D:ZT66 2.9 9.9 1.0
C8 D:ZT66 2.9 12.6 1.0
C3 D:ZT66 2.9 9.8 1.0
C5 D:ZT66 2.9 15.6 1.0
HB2 D:ZT66 2.9 5.0 1.0
H31 D:ZT66 2.9 9.2 1.0
H81 D:ZT66 2.9 12.6 1.0
H61 D:ZT66 2.9 12.3 1.0
H21 D:ZT66 3.0 10.2 1.0
H53 D:ZT66 3.0 14.3 1.0
H62 D:ZT66 3.1 13.0 1.0
H51 D:ZT66 3.1 14.4 1.0
H23 D:ZT66 3.2 10.2 1.0
H82 D:ZT66 3.2 12.5 1.0
H92 D:ZT66 3.3 10.0 1.0
H32 D:ZT66 3.3 9.7 1.0
HD2 D:ZT66 3.7 4.9 1.0
CG D:ZT66 3.7 4.7 1.0
H33 D:ZT66 3.8 9.6 1.0
H93 D:ZT66 3.8 9.9 1.0
H63 D:ZT66 3.8 12.5 1.0
H22 D:ZT66 3.8 9.7 1.0
H52 D:ZT66 3.9 14.9 1.0
H83 D:ZT66 3.9 12.6 1.0
CA D:ZT66 3.9 4.7 1.0
CD2 D:ZT66 4.1 4.9 1.0
C D:ZT66 4.1 5.0 1.0
H D:ZT66 4.1 4.6 1.0
O C:ZTK3 4.3 5.3 1.0
O D:ZT66 4.4 5.9 1.0
N D:ZT66 4.5 4.7 1.0
HA C:ZTK3 4.5 4.8 1.0
H D:ZTC7 4.6 5.3 1.0
N D:ZTC7 4.7 5.3 1.0
H1 D:MOH103 4.7 12.0 1.0
HA D:ZT66 4.7 4.7 1.0
O D:MOH103 4.8 10.1 1.0
HO D:MOH103 4.9 10.1 1.0
CD1 D:ZT66 4.9 5.0 1.0

Reference:

M.J.Moore, P.Qin, D.J.Keith, Z.C.Wu, S.Jung, S.Chatterjee, C.Tan, S.Qu, Y.Cai, R.L.Stanfield, D.L.Boger. Divergent Total Synthesis and Characterization of Maxamycins. J.Am.Chem.Soc. V. 145 12837 2023.
ISSN: ESSN 1520-5126
PubMed: 37278486
DOI: 10.1021/JACS.3C03710
Page generated: Thu Oct 10 13:41:21 2024

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